STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BHR5Related to emp24 protein. (243 aa)    
Predicted Functional Partners:
A0A0P1BQK7
Related to erv25-component of the copii-coated vesicles.
   
 0.998
A0A0P1BSU7
Related to erp2-p24 protein involved in membrane trafficking.
  
0.983
A0A0P1A3Y5
Membrane trafficking protein.
   
 0.977
A0A0P1BE68
Membrane protein.
   
 0.977
A0A0P1BPI1
Surf4-domain-containing protein.
   
 0.871
A0A0P1BKE6
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.838
A0A0N7LAY4
Gtp-binding protein sar1; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.820
A0A0N7LAU4
Wd40 repeat-like protein; Belongs to the WD repeat SEC13 family.
    
 0.813
A0A0P1BA89
Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
  0.796
A0A0P1BHF3
Gtp-binding protein ypt1.
   
 0.783
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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