STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BI70Vacuolar sorting protein PEP3/VPS18. (1249 aa)    
Predicted Functional Partners:
A0A0P1BJ31
Vacuolar sorting protein VPS33/slp1 (Sec1 family); Belongs to the STXBP/unc-18/SEC1 family.
   
 0.999
A0A0P1BMA7
Vacuolar assembly/sorting protein PEP5/VPS11.
   
 0.998
A0A0P1BT04
Vacuolar assembly/sorting protein VPS41.
    
 0.998
A0A0P1BT50
TRANSFORMING GROWTH FACTOR-BETA RECEPTOR-ASSOCIATED PROTEIN 1.
   
 0.996
A0A0P1BEX4
Vacuolar assembly/sorting protein VPS8.
    
 
 0.995
A0A0P1BE53
Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.
   
 0.971
A0A0P1BKL1
Uncharacterized protein family UPF0311.
   
 0.971
A0A0P1BDP7
Ras-related GTPase.
    
 
 0.969
A0A0P1BE19
Vesicle transport v-snare protein vti1.
    
 
 0.967
A0A0P1BCL8
SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17; Belongs to the syntaxin family.
    
 
 0.936
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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