STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BIA2Duf1777-domain-containing protein. (250 aa)    
Predicted Functional Partners:
A0A0P1BAR5
Related to snrnp protein.
    
 0.859
A0A0P1BFF8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.855
A0A0P1B9J9
U5 snRNP-specific protein-like factor and related proteins.
   
  0.846
A0A0P1BJ22
U4/U6.U5 snRNP associated protein.
    
 0.842
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
  0.836
A0A0P1BKC2
Putative u4/u6 small nuclear ribonucleoprotein.
   
 0.817
A0A0P1BN99
Small nuclear ribonucleoprotein Sm D2.
   
  0.799
A0A0P1BAR9
Rna-binding domain-containing protein.
    
  0.792
A0A0P1BAX3
U6 snrna-associated sm-like protein lsm2.
   
  0.787
A0A0P1BM53
Small nuclear ribonucleoprotein Sm D3.
   
 0.785
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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