STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BJ59Related to spliceosome-associated protein sap-49. (341 aa)    
Predicted Functional Partners:
A0A0N7L9P2
Splicing factor 3b, subunit 2.
   
 0.999
A0A0P1BDL3
Phf5-like protein.
    
 0.999
A0A0P1BJA3
Probable splicing factor 3b subunit 1.
    
 0.999
A0A0P1BP17
Pre-mrna-splicing factor rse1.
   
 0.999
A0A0P1BQ30
Uncharacterized conserved protein.
   
 0.999
A0A0P1BEB2
Related to prp11-pre-mrna splicing factor.
   
 0.998
A0A0P1BEB1
Rna splicing factor prp9.
    
 0.997
A0A0P1BJE9
Related to u2 snrnp protein a.
    
 0.997
A0A0P1BNQ2
Mismatch repair ATPase MSH5 (MutS family).
   
 0.997
A0A0P1BNR3
U1 snRNP component.
    
 0.996
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.