STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BJR7Transcription elongation factor TAT-SF1. (515 aa)    
Predicted Functional Partners:
A0A0P1BJA3
Probable splicing factor 3b subunit 1.
    
 
 0.967
A0A0P1BI37
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.964
A0A0P1BPS5
Pre-mrna-splicing factor clf1.
   
 
 0.938
A0A0P1BEB2
Related to prp11-pre-mrna splicing factor.
   
 
 0.914
A0A0P1BJE9
Related to u2 snrnp protein a.
    
 
 0.910
A0A0P1BP17
Pre-mrna-splicing factor rse1.
    
 
 0.891
A0A0N7L9P2
Splicing factor 3b, subunit 2.
   
 
 0.879
A0A0P1B9U6
Small nuclear ribonucleo protein.
   
   0.875
A0A0P1BNQ2
Mismatch repair ATPase MSH5 (MutS family).
    
 
 0.809
A0A0P1BDL3
Phf5-like protein.
    
 
 0.779
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.