STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BLA7Predicted E3 ubiquitin ligase. (1091 aa)    
Predicted Functional Partners:
A0A0P1BBT6
Ubiquitin-protein ligase.
     
 0.777
A0A0P1BCG2
Ubiquitin-40s ribosomal protein s27a.
    
  0.624
A0A0P1BE24
Polyubiquitin.
   
  0.584
A0A0P1BEL5
Ubiquitin and ubiquitin-like proteins.
   
  0.584
A0A0P1BIR4
Nedd8 activating enzyme.
    
  0.556
A0A0P1BN86
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...]
    
  0.556
A0A0N7LAD7
Nucleotide excision repair factor NEF2, RAD23 component.
    
  0.507
A0A0P1BDR8
Ubiquitin-like protein.
    
  0.507
A0A0P1BI54
Ubiquitin-like protein.
    
  0.507
A0A0P1BPF0
RBR-type E3 ubiquitin transferase.
    
  0.497
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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