A0A0P1BQG9 protein (Ceraceosorus bombacis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0P1BQG9

RNA polymerase III transcription factor (TF)IIIC subunit. (658 aa)

Predicted Functional Partners:

A0A0P1BD67

0.998

A0A0N7LAI5

0.975

A0A0P1BNJ0

0.962

A0A0P1BDH7

0.918

A0A0N7L9X1

0.842

A0A0P1BQ03

0.792

A0A0P1BG40

0.786

A0A0P1BG24

0.760

A0A0P1BEY2

0.750

A0A0P1BMH9

0.737

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N7L9X1	A0A0N7LAI5	Transcription initiation factor bdp1 subunit.	Uncharacterized protein.	0.676
A0A0N7L9X1	A0A0P1BD67	Transcription initiation factor bdp1 subunit.	RNA polymerase III transcription factor TFIIIC.	0.958
A0A0N7L9X1	A0A0P1BDH7	Transcription initiation factor bdp1 subunit.	Transcription initiation factor TFIIIB, Brf1 subunit.	0.997
A0A0N7L9X1	A0A0P1BEY2	Transcription initiation factor bdp1 subunit.	RNA Polymerase C (III) 37 kDa subunit.	0.970
A0A0N7L9X1	A0A0P1BG24	Transcription initiation factor bdp1 subunit.	DNA-directed RNA polymerase III subunit.	0.959
A0A0N7L9X1	A0A0P1BG40	Transcription initiation factor bdp1 subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
A0A0N7L9X1	A0A0P1BMH9	Transcription initiation factor bdp1 subunit.	Transcription initiation factor tfiid-1.	0.996
A0A0N7L9X1	A0A0P1BQ03	Transcription initiation factor bdp1 subunit.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
A0A0N7L9X1	A0A0P1BQG9	Transcription initiation factor bdp1 subunit.	RNA polymerase III transcription factor (TF)IIIC subunit.	0.842
A0A0N7LAI5	A0A0N7L9X1	Uncharacterized protein.	Transcription initiation factor bdp1 subunit.	0.676
A0A0N7LAI5	A0A0P1BD67	Uncharacterized protein.	RNA polymerase III transcription factor TFIIIC.	0.945
A0A0N7LAI5	A0A0P1BDH7	Uncharacterized protein.	Transcription initiation factor TFIIIB, Brf1 subunit.	0.687
A0A0N7LAI5	A0A0P1BG24	Uncharacterized protein.	DNA-directed RNA polymerase III subunit.	0.572
A0A0N7LAI5	A0A0P1BG40	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.590
A0A0N7LAI5	A0A0P1BMH9	Uncharacterized protein.	Transcription initiation factor tfiid-1.	0.671
A0A0N7LAI5	A0A0P1BQ03	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.638
A0A0N7LAI5	A0A0P1BQG9	Uncharacterized protein.	RNA polymerase III transcription factor (TF)IIIC subunit.	0.975
A0A0P1BD67	A0A0N7L9X1	RNA polymerase III transcription factor TFIIIC.	Transcription initiation factor bdp1 subunit.	0.958
A0A0P1BD67	A0A0N7LAI5	RNA polymerase III transcription factor TFIIIC.	Uncharacterized protein.	0.945
A0A0P1BD67	A0A0P1BDH7	RNA polymerase III transcription factor TFIIIC.	Transcription initiation factor TFIIIB, Brf1 subunit.	0.992