STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BSX9Sec63-domain-containing protein. (1912 aa)    
Predicted Functional Partners:
A0A0P1BAW8
Probable pre-mrna splicing factor prp1.
   
 0.931
A0A0P1BM53
Small nuclear ribonucleoprotein Sm D3.
   
 0.898
A0A0P1BN99
Small nuclear ribonucleoprotein Sm D2.
   
 0.895
A0A0P1B9U6
Small nuclear ribonucleo protein.
   
 0.893
A0A0P1BBM3
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.892
A0A0P1BQP2
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.890
A0A0P1BNR3
U1 snRNP component.
    
 0.886
A0A0P1BFF8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.884
A0A0P1B9J9
U5 snRNP-specific protein-like factor and related proteins.
   
 0.870
A0A0P1BJ22
U4/U6.U5 snRNP associated protein.
   
 0.853
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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