STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BT63tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. (526 aa)    
Predicted Functional Partners:
A0A0P1BFQ7
Uncharacterized protein.
  
 0.837
A0A0P1BMY7
COPII vesicle protein.
  
 0.837
A0A0P1BRW2
COPII vesicle protein.
  
 0.837
A0A0P1BA48
Riboflavin kinase.
  
 
  0.783
A0A0N7LAB0
Argininosuccinate lyase.
    
  0.731
A0A0P1BIJ3
Argininosuccinate lyase.
    
  0.731
A0A0P1BKH7
Cytoplasmic trna 2-thiolation protein 1.
   
 
 0.721
A0A0P1BEB9
Cysteine desulfurase.
  
 
 0.713
A0A0P1BEZ4
Cysteine desulfurase NFS1.
  
 
 0.710
A0A0P1BBD5
Adenylosuccinate lyase.
  
  
 0.693
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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