STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APU47946.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (891 aa)    
Predicted Functional Partners:
APU47845.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.842
APU47949.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.814
APU47947.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
APU47948.1
HNH endonuclease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
APU47055.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.644
APU47100.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.642
pleD_4
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.446
APU47945.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
APU47419.1
Pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.441
sucB
Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
 0.441
Your Current Organism:
Acinetobacter junii
NCBI taxonomy Id: 40215
Other names: A. junii, ATCC 17908, Acinetobacter genomosp. 5, Acinetobacter genomospecies 5, Acinetobacter grimontii, Acinetobacter grimontii Carr et al. 2003, Acinetobacter sp. WR4, Acinetobacter sp. WR5, CCUG 50767 [[Acinetobacter grimontii]], CCUG 889, CIP 107470, CIP 64.5, DSM 14968 [[Acinetobacter grimontii]], DSM 6964, LMG 998, LMG:998, NCTC 12153, strain 17A04 [[Acinetobacter grimontii]], strain Mannheim 2723/59
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