STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE65Retinoid isomerohydrolase RPE65. (545 aa)    
Predicted Functional Partners:
RDH10
Retinol dehydrogenase 10.
   
 
 0.946
LRAT
Lecithin retinol acyltransferase.
     
 0.944
PNPLA4
Patatin like phospholipase domain containing 4.
     
 0.933
ENSJHYP00000016942
annotation not available
   
 
 0.836
ENSJHYP00000004657
annotation not available
   
 
 0.781
CCNB2
Cyclin B2.
   
  
 0.770
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
    
 0.719
SOAT1
Sterol O-acyltransferase 1.
   
 
 0.700
CENPF
Centromere protein F.
   
  
 0.676
ENSJHYP00000005583
annotation not available
   
 
 0.666
Your Current Organism:
Junco hyemalis
NCBI taxonomy Id: 40217
Other names: J. hyemalis, dark-eyed junco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.