STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PATL2PAT1 homolog 2. (696 aa)    
Predicted Functional Partners:
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
   
 
  0.990
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.989
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.985
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.985
DDX6
DEAD-box helicase 6.
   
 0.984
ENSJHYP00000007576
annotation not available
    
 0.981
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.980
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
  0.979
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 0.978
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.974
Your Current Organism:
Junco hyemalis
NCBI taxonomy Id: 40217
Other names: J. hyemalis, dark-eyed junco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.