STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC06243.1TRAP-type C4-dicarboxylate transport system, small permease component. (174 aa)    
Predicted Functional Partners:
SFC06214.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.948
SFC06270.1
TRAP transporter, DctM subunit.
 
  0.908
SFC06295.1
Gluconolactonase.
 
  
  0.813
SFC62438.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.678
SFC75091.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.655
SFC75069.1
TRAP transporter, DctM subunit.
 
  0.653
SFB97646.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.545
SFC87821.1
TRAP transporter, DctM subunit.
 
  0.533
SFC62418.1
TRAP transporter, DctM subunit.
 
  0.505
SFC62458.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.499
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.