STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC25039.1Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily. (383 aa)    
Predicted Functional Partners:
SFC24986.1
Sorbitol ABC transporter membrane protein.
 
 0.986
SFC25012.1
Sorbitol ABC transporter membrane protein.
 0.984
ugpE
Carbohydrate ABC transporter membrane protein 2, CUT1 family; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 0.958
SFC52834.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
 0.953
SFC24952.1
Sorbitol-binding protein /mannitol-binding protein.
  
 0.926
SFC82633.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
 0.924
SFC86585.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 0.919
SFC86600.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
 0.898
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
     
0.893
SFC52814.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
 0.882
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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