STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC26425.1DNA-binding transcriptional regulator, AcrR family. (204 aa)    
Predicted Functional Partners:
SFC26458.1
Hypothetical protein.
 
     0.856
lptE
LPS-assembly lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.648
SFC46513.1
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.607
SFC35257.1
Protein of unknown function.
  
     0.605
SFC26362.1
Secreted Zn-dependent peptidases, insulinase-like; Belongs to the peptidase M16 family.
 
     0.585
SFC08845.1
Soluble lytic murein transglycosylase.
  
     0.534
SFC86473.1
Nuclease-related domain-containing protein.
  
     0.533
SFC26399.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
       0.531
SFC03266.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
  
    0.519
SFC81506.1
TIGR02099 family protein.
  
     0.505
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.