STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC36630.1TIGR03503 family protein. (592 aa)    
Predicted Functional Partners:
SFC01208.1
Magnesium chelatase subunit D.
  
 0.949
SFC36606.1
Hypothetical protein.
       0.828
SFC36655.1
Glutamine amidotransferase.
       0.810
SFC71609.1
Ferredoxin-NADP reductase.
   
 
  0.739
SFC04197.1
DNA replication terminus site binding protein.
  
     0.642
SFC01379.1
Cobaltochelatase CobN subunit.
  
 0.634
SFC03266.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
  
     0.608
SFC05288.1
Serine/threonine protein kinase.
 
    0.603
SFC36596.1
Oligopeptidase B.
       0.584
cmoB
tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
  
 
 0.569
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.