STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC59030.1Probable DNA metabolism protein. (295 aa)    
Predicted Functional Partners:
SFC59011.1
Putative DNA modification/repair radical SAM protein.
     0.948
SFC31650.1
Protein of unknown function.
  
     0.629
SFC24268.1
DNA topoisomerase-1.
  
     0.540
SFC59043.1
Hypothetical protein.
       0.529
SFC58996.1
Enterobactin synthetase component D; Belongs to the P-Pant transferase superfamily.
       0.490
SFC58974.1
Beta-hydroxylase.
  
    0.487
SFC04017.1
Competence protein ComEC.
      
 0.445
SFC60732.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
    0.432
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.