STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC62418.1TRAP transporter, DctM subunit. (424 aa)    
Predicted Functional Partners:
SFC62458.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.917
SFC62438.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.892
SFC30413.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.871
SFC85310.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.844
SFC91513.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.833
SFC43222.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.785
SFC79817.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.784
SFC62400.1
Ribose 5-phosphate isomerase B.
       0.714
SFC75055.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.699
SFC87792.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.619
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.