STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC75318.1Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. (735 aa)    
Predicted Functional Partners:
SFC75367.1
Bifunctional isochorismate lyase / aryl carrier protein.
   
  
 0.855
SFC64326.1
Hypothetical protein.
  
     0.665
SFC60213.1
Enterobactin synthetase component F.
  
  
 0.645
SFC50725.1
Iron complex outermembrane recepter protein.
  
  
 0.638
SFC50800.1
Hypothetical protein.
  
     0.620
SFC74280.1
Iron complex outermembrane recepter protein.
  
    0.606
SFC73470.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.578
SFC85955.1
Iron complex outermembrane recepter protein.
  
    0.549
SFC03008.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.538
SFC64306.1
Ferric enterobactin receptor.
  
  
 0.457
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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