STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC79574.1D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (442 aa)    
Predicted Functional Partners:
SFC79656.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.978
SFC79672.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.806
SFC79594.1
Putative tricarboxylic transport membrane protein.
       0.757
SFC79613.1
Putative tricarboxylic transport membrane protein.
       0.757
SFC05688.1
Sugar lactone lactonase YvrE.
    
  0.741
SFC88360.1
D-galactarolactone cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
     
 0.740
SFC79555.1
NADP-dependent aldehyde dehydrogenase.
 
  
  0.731
SFC79631.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
       0.721
SFC42879.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.445
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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