STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC81701.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (232 aa)    
Predicted Functional Partners:
SFC60213.1
Enterobactin synthetase component F.
 
 
  0.817
SFC06803.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.703
SFC70875.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.662
SFC44893.1
Hypothetical protein.
  
 
  0.640
SFC75335.1
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
  
 
  0.563
SFC76098.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.500
SFC81720.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
       0.412
SFC81739.1
Phytoene desaturase.
       0.412
SFC81763.1
Phytoene synthase.
       0.412
SFC81783.1
Lycopene beta-cyclase.
       0.412
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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