STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC87973.12-keto-3-deoxy-phosphogalactonate aldolase. (207 aa)    
Predicted Functional Partners:
SFC87961.1
2-keto-3-deoxygalactonate kinase.
  
 0.998
SFC10281.1
Phosphocarrier protein HPr; Belongs to the PEP-utilizing enzyme family.
    
 0.944
SFC31160.1
2-keto-3-deoxy-phosphogluconate aldolase.
  
  
 
0.923
SFC30311.1
2-keto-3-deoxygluconate kinase.
 
 
 0.920
SFC88005.1
Galactonate dehydratase.
  
 0.889
SFC10252.1
PTS system N-acetylglucosamine-specific IIB component, Glc family /PTS system N-acetylglucosamine-specific IIC component, Glc family.
  
 
 0.872
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
 
 0.863
glk
Glucokinase; Belongs to the bacterial glucokinase family.
  
 
 0.834
SFC07490.1
FAD/FMN-containing dehydrogenase.
   
 
 0.827
SFC87940.1
Transcriptional regulator, IclR family.
 
   
 0.815
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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