STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB28642.14-amino-4-deoxy-L-arabinose transferase. (555 aa)    
Predicted Functional Partners:
SEB28654.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.858
SEB28647.1
Hypothetical protein.
  
    0.779
SEB28651.1
Methyltransferase domain-containing protein.
       0.774
SEB28640.1
Predicted membrane protein.
       0.773
SEB28645.1
Hypothetical protein.
       0.773
SEC79921.1
Concanavalin A-like lectin/glucanases superfamily protein.
  
     0.773
SEB50843.1
Hypothetical protein.
  
     0.762
SED29226.1
MerR HTH family regulatory protein.
  
     0.698
SEB88183.1
DNA-binding transcriptional regulator, MerR family.
  
     0.658
SEB50669.1
PKD domain-containing protein.
  
     0.657
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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