STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB50696.1Hypothetical protein. (231 aa)    
Predicted Functional Partners:
SEB50625.1
PKD domain-containing protein.
      
0.773
SEB50645.1
PKD domain-containing protein.
      
0.773
SEB50669.1
PKD domain-containing protein.
      
0.773
SEB50547.1
DivIVA domain-containing protein.
       0.509
SEB50574.1
Hypothetical protein; Belongs to the LOG family.
       0.509
SEB50596.1
Succinyldiaminopimelate desuccinylase.
       0.509
SEB50489.1
Protein MpaA.
       0.487
SEB50523.1
Hypothetical protein.
       0.487
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.