STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC16955.1Low affinity Fe/Cu permease. (131 aa)    
Predicted Functional Partners:
SEB97460.1
Hypothetical protein.
  
     0.631
SEB63974.1
Hypothetical protein.
  
     0.540
SEC42451.1
LytR cell envelope-related transcriptional attenuator.
  
     0.499
SEC68721.1
Hypothetical protein.
  
     0.487
SEC17006.1
GAF domain-containing protein.
       0.478
SEB64018.1
Hypothetical protein.
  
     0.425
SEC14512.1
Type VII secretion integral membrane protein EccD.
  
     0.418
SEB28620.1
Hypothetical protein.
  
     0.417
SEC14559.1
Type VII secretion system ESX-1, transport TM domain B.
  
     0.414
SED01174.1
Trp region conserved hypothetical membrane protein.
  
     0.411
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.