STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC31293.1RNA polymerase sigma-70 factor, ECF subfamily. (257 aa)    
Predicted Functional Partners:
SEC31230.1
Hypothetical protein.
 
 
   0.991
SEB50364.1
RNA polymerase, sigma 29 subunit, SigE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.744
SEC53654.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.743
SEC75922.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.707
SEC51072.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.686
SED06033.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.678
SEB49114.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.677
SED24795.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.659
SEB84342.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.649
SEC31348.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
       0.634
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.