STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC42638.1Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose). (148 aa)    
Predicted Functional Partners:
SEC42694.1
Dolichol-phosphate mannosyltransferase.
 
    0.887
SEC42569.1
Hypothetical protein.
       0.778
SEC42749.1
Threonine synthase.
       0.487
SEC42800.1
Molybdopterin converting factor, small subunit.
       0.465
SEC67235.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.412
SEC42851.1
Hypothetical protein.
       0.400
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.