STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC44404.1Uncharacterized membrane protein YckC, RDD family. (306 aa)    
Predicted Functional Partners:
SEC44354.1
Hypothetical protein.
 
     0.919
SEC44304.1
Protein phosphatase.
  
    0.770
SEC13915.1
Hypothetical protein.
  
     0.745
SEC89492.1
Hypothetical protein.
 
     0.667
SEC97562.1
Thermolysin metallopeptidase, catalytic domain.
  
     0.624
SEB47053.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
  
     0.613
SEC41589.1
Hypothetical protein.
  
     0.608
SEC67039.1
PLD-like domain-containing protein.
  
     0.595
SEB96355.1
Hypothetical protein.
  
     0.588
SEC44235.1
Helicase conserved C-terminal domain-containing protein.
 
    0.579
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.