STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC45424.1Hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (452 aa)    
Predicted Functional Partners:
SEC31924.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.956
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.937
SEC31860.1
Uroporphyrinogen III methyltransferase / synthase.
 
 
 0.867
SED20405.1
uroporphyrinogen-III C-methyltransferase.
 
  
 0.853
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.850
SEC45530.1
4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    
0.817
SEB63006.1
Condensation domain-containing protein.
   
 0.794
SEC32070.1
Broad specificity phosphatase PhoE.
  
    0.793
SEC45473.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.786
SEC32109.1
Thiol-disulfide isomerase or thioredoxin.
  
  
 0.785
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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