STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC85778.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
SEB71980.1
Anti-sigma regulatory factor (Ser/Thr protein kinase); Manually curated.
 
 0.922
SEC76633.1
Serine/threonine-protein kinase RsbW.
 
 0.922
SEC37988.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.891
SEB53707.1
Signal transduction histidine kinase.
  
 
 0.839
SEC38041.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
   
  0.805
SEC38100.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
   
  0.805
SEB45673.1
Stage II sporulation protein E (SpoIIE).
  
 0.794
SED20679.1
Stage II sporulation protein E (SpoIIE).
  
 0.794
SEC21898.1
FO synthase subunit 1 /FO synthase subunit 2.
  
    0.758
SEB89276.1
Flagellar hook protein FlgE.
   
    0.757
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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