STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC86798.1Serine/threonine protein kinase. (461 aa)    
Predicted Functional Partners:
SED12242.1
Zinc-ribbon domain-containing protein.
  
 
 
 0.903
SED24675.1
Serine/threonine protein phosphatase PrpC.
 
  0.874
SEC00325.1
Protein phosphatase.
 
 0.865
SEC44304.1
Protein phosphatase.
 
 0.865
SEB53707.1
Signal transduction histidine kinase.
   
 0.681
SEC00264.1
FHA domain-containing protein.
 
 
 
 0.653
SED32990.1
Serine/threonine protein kinase.
 
 
0.616
SEC00559.1
Serine/threonine protein kinase.
 
 
0.611
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.606
SEC00215.1
FHA domain-containing protein.
 
 
 
 0.573
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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