STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED28335.1Transcriptional regulator, AbiEi antitoxin, Type IV TA system. (332 aa)    
Predicted Functional Partners:
SEC41589.1
Hypothetical protein.
  
     0.569
SEC13915.1
Hypothetical protein.
  
   
 0.558
SEC44354.1
Hypothetical protein.
  
     0.531
SEC99505.1
Hypothetical protein.
  
     0.507
SEC85068.1
Protein of unknown function.
  
     0.505
SED29912.1
Putative transmembrane protein (PGPGW).
  
     0.505
SEC65948.1
Protein of unknown function.
  
     0.486
SEC47868.1
Transglutaminase-like superfamily protein.
  
     0.472
SEC62086.1
Protein of unknown function.
  
     0.465
SEC91883.1
Protein of unknown function.
  
     0.465
Your Current Organism:
Nocardioides exalbidus
NCBI taxonomy Id: 402596
Other names: CCTCC AA206016, DSM 22017, IAM 15416, JCM 23199, N. exalbidus, Nocardioides exalbidus Li et al. 2007, strain RC825
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.