STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP69381.1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
SEP69409.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
 
 0.922
SEP76240.1
Hypothetical protein.
  
  
  0.784
SEP72571.1
Hypothetical protein.
  
     0.770
SEP69712.1
SdpI/YhfL protein family protein.
  
     0.766
SEP89934.1
Anti-sigma-D factor RsdA to sigma factor binding region.
  
     0.765
SEP90956.1
Hypothetical protein.
  
     0.761
SEP94694.1
Hypothetical protein.
  
     0.757
SEQ51956.1
Hypothetical protein.
  
     0.757
SEP96243.1
Hypothetical protein.
  
     0.753
SEQ08867.1
Hypothetical protein.
  
     0.751
Your Current Organism:
Lechevalieria xinjiangensis
NCBI taxonomy Id: 402600
Other names: CGMCC 4.3525, DSM 45081, JCM 15473, L. xinjiangensis, Lechevalieria xinjiangensis Wang et al. 2007, strain R24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.