STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ21784.1Phenazine biosynthesis protein PhzF family. (424 aa)    
Predicted Functional Partners:
SER76776.1
Nicotinamidase-related amidase.
 
  
  0.793
SEQ21728.1
Dynamin family protein.
  
    0.738
SEQ21755.1
Hypothetical protein.
       0.737
SEQ48805.1
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.492
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.492
lysA-2
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.492
SEQ21703.1
Hypothetical protein.
       0.437
SEQ48713.1
Para-aminobenzoate synthetase.
  
  
 0.433
SER04070.1
Mannose-6-phosphate isomerase, cupin superfamily.
  
     0.414
SER06007.1
Arylamine N-acetyltransferase.
 
     0.410
Your Current Organism:
Lechevalieria xinjiangensis
NCBI taxonomy Id: 402600
Other names: CGMCC 4.3525, DSM 45081, JCM 15473, L. xinjiangensis, Lechevalieria xinjiangensis Wang et al. 2007, strain R24
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