SEQ66548.1 protein (Lechevalieria xinjiangensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEQ66548.1

Hypothetical protein. (108 aa)

Predicted Functional Partners:

SEQ65352.1

0.739

SEQ79908.1

0.739

SER01722.1

0.739

SES35089.1

0.739

SES33281.1

0.737

SER01822.1

0.720

SER25308.1

0.703

SER49771.1

0.703

SEQ66497.1

0.616

SEQ66519.1

0.584

Your Current Organism:

Lechevalieria xinjiangensis

NCBI taxonomy Id: 402600
Other names: CGMCC 4.3525, DSM 45081, JCM 15473, L. xinjiangensis, Lechevalieria xinjiangensis Wang et al. 2007, strain R24

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEQ65352.1	SEQ66497.1	SAMN05216188_104184	SAMN05216188_104226	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	2-oxoglutarate dehydrogenase E2 component.	0.814
SEQ65352.1	SEQ66519.1	SAMN05216188_104184	SAMN05216188_104227	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Dihydrolipoamide dehydrogenase.	0.480
SEQ65352.1	SEQ66548.1	SAMN05216188_104184	SAMN05216188_104228	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Hypothetical protein.	0.739
SEQ65352.1	SEQ79908.1	SAMN05216188_104184	SAMN05216188_105145	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Amino acid adenylation domain-containing protein.	0.999
SEQ65352.1	SER01722.1	SAMN05216188_104184	SAMN05216188_10789	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SEQ65352.1	SER01822.1	SAMN05216188_104184	SAMN05216188_10792	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Phosphopantetheine attachment site.	0.999
SEQ65352.1	SES33281.1	SAMN05216188_104184	SAMN05216188_13420	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Polyketide synthase PksN/rhizoxin biosynthesis, polyketide synthase RhiD.	0.999
SEQ65352.1	SES35089.1	SAMN05216188_104184	SAMN05216188_13721	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Non-ribosomal peptide synthetase component F.	0.999
SEQ66497.1	SEQ65352.1	SAMN05216188_104226	SAMN05216188_104184	2-oxoglutarate dehydrogenase E2 component.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.814
SEQ66497.1	SEQ66519.1	SAMN05216188_104226	SAMN05216188_104227	2-oxoglutarate dehydrogenase E2 component.	Dihydrolipoamide dehydrogenase.	0.999
SEQ66497.1	SEQ66548.1	SAMN05216188_104226	SAMN05216188_104228	2-oxoglutarate dehydrogenase E2 component.	Hypothetical protein.	0.616
SEQ66497.1	SEQ79908.1	SAMN05216188_104226	SAMN05216188_105145	2-oxoglutarate dehydrogenase E2 component.	Amino acid adenylation domain-containing protein.	0.814
SEQ66497.1	SER01722.1	SAMN05216188_104226	SAMN05216188_10789	2-oxoglutarate dehydrogenase E2 component.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.814
SEQ66497.1	SER01822.1	SAMN05216188_104226	SAMN05216188_10792	2-oxoglutarate dehydrogenase E2 component.	Phosphopantetheine attachment site.	0.500
SEQ66497.1	SER25308.1	SAMN05216188_104226	SAMN05216188_109160	2-oxoglutarate dehydrogenase E2 component.	Hypothetical protein.	0.402
SEQ66497.1	SER49771.1	SAMN05216188_104226	SAMN05216188_11210	2-oxoglutarate dehydrogenase E2 component.	Protein of unknown function.	0.402
SEQ66497.1	SES33281.1	SAMN05216188_104226	SAMN05216188_13420	2-oxoglutarate dehydrogenase E2 component.	Polyketide synthase PksN/rhizoxin biosynthesis, polyketide synthase RhiD.	0.820
SEQ66497.1	SES35089.1	SAMN05216188_104226	SAMN05216188_13721	2-oxoglutarate dehydrogenase E2 component.	Non-ribosomal peptide synthetase component F.	0.814
SEQ66519.1	SEQ65352.1	SAMN05216188_104227	SAMN05216188_104184	Dihydrolipoamide dehydrogenase.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.480
SEQ66519.1	SEQ66497.1	SAMN05216188_104227	SAMN05216188_104226	Dihydrolipoamide dehydrogenase.	2-oxoglutarate dehydrogenase E2 component.	0.999