STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER35408.1Hypothetical protein. (333 aa)    
Predicted Functional Partners:
SER01392.1
Regulator of RNase E activity RraA.
 
  
 0.770
SER00319.1
RraA famliy.
 
  
 0.765
SER05542.1
Regulator of RNase E activity RraA.
    
 0.734
SEQ90804.1
Hypothetical protein.
    
  0.671
SEP84907.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.662
SEQ81568.1
Phthalate 4,5-dioxygenase, reductase subunit.
    
  0.662
SEQ89579.1
Ferredoxin-NADP reductase.
    
  0.662
SES23549.1
3-ketosteroid 9alpha-monooxygenase subunit B.
    
  0.662
SES05492.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
    
  0.660
SES09041.1
Catechol 2,3-dioxygenase.
 
  
 0.603
Your Current Organism:
Lechevalieria xinjiangensis
NCBI taxonomy Id: 402600
Other names: CGMCC 4.3525, DSM 45081, JCM 15473, L. xinjiangensis, Lechevalieria xinjiangensis Wang et al. 2007, strain R24
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