STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER54795.1Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain. (245 aa)    
Predicted Functional Partners:
SER59757.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
  0.800
SEQ46845.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
    
  0.796
SER41024.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
    
  0.796
SER15689.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
  0.773
SER54758.1
Hypothetical protein.
       0.709
SER54826.1
Acylphosphatase.
       0.673
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
    0.492
SER54855.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.484
SER54882.1
Putative zinc-finger.
       0.480
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
    
  0.466
Your Current Organism:
Lechevalieria xinjiangensis
NCBI taxonomy Id: 402600
Other names: CGMCC 4.3525, DSM 45081, JCM 15473, L. xinjiangensis, Lechevalieria xinjiangensis Wang et al. 2007, strain R24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.