STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER68424.1Predicted arabinose efflux permease, MFS family. (386 aa)    
Predicted Functional Partners:
SEQ65543.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
  
  0.705
SEP75085.1
Drug resistance transporter, EmrB/QacA subfamily.
  
    0.651
SEQ30610.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
    0.619
SER68452.1
Hypothetical protein.
       0.590
SER68488.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.590
SER68546.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
  0.582
SES38010.1
Drug resistance transporter, EmrB/QacA subfamily.
  
    0.578
SER27212.1
Hypothetical protein.
  
     0.526
SEQ66266.1
Kynurenine formamidase.
   
    0.521
SER52175.1
Predicted arabinose efflux permease, MFS family.
  
    0.514
Your Current Organism:
Lechevalieria xinjiangensis
NCBI taxonomy Id: 402600
Other names: CGMCC 4.3525, DSM 45081, JCM 15473, L. xinjiangensis, Lechevalieria xinjiangensis Wang et al. 2007, strain R24
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