STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP1143Probable secreted M23/M37 family peptidase precursor. (563 aa)    
Predicted Functional Partners:
FP1142
Probable outer membrane protein precursor.
       0.829
FP0229
Probable M23/M37 family peptidase.
  
     0.683
FP1145
Protein of unknown function.
       0.591
FP1144
Protein of unknown function.
       0.559
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.514
cphA
Cyanophycin synthetase; Belongs to the MurCDEF family.
    
 0.480
FP2455
Protein of unknown function.
    
 0.480
FP1896
LysM domain protein precursor.
  
 
 0.470
FP1141
Probable lipoprotein precursor.
       0.459
FP2005
Protein of unknown function.
  
     0.449
Your Current Organism:
Flavobacterium psychrophilum
NCBI taxonomy Id: 402612
Other names: F. psychrophilum JIP02/86, Flavobacterium psychrophilum JIP02/86, Flavobacterium psychrophilum str. JIP02/86, Flavobacterium psychrophilum strain JIP02/86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.