STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
porUPor secretion system protein PorU precursor. (1278 aa)    
Predicted Functional Partners:
porV
Por secretion system protein porV precursor.
 
   
 0.916
porQ
Protein of unknown function precursor PorQ.
 
   
 0.844
FP1240
Protein of unknown function precursor.
 
     0.783
FP0270
Protein of unknown function precursor; putative immunoreactive 84 kDa antigen.
  
     0.774
FP0303
Protein of unknown function precursor.
  
     0.773
FP1205
Putative muramidase precursor.
  
  
 0.772
FP1344
Probable outer membrane protein precursor.
  
     0.769
FP1904
Putative muramidase precursor.
  
  
 0.764
FP0263
Hypothetical protein precursor.
  
     0.752
FP1168
Probable peptidyl-prolyl cis-trans isomerase precursor.
  
   
 0.752
Your Current Organism:
Flavobacterium psychrophilum
NCBI taxonomy Id: 402612
Other names: F. psychrophilum JIP02/86, Flavobacterium psychrophilum JIP02/86, Flavobacterium psychrophilum str. JIP02/86, Flavobacterium psychrophilum strain JIP02/86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.