STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bamAOuter membrane protein assembly complex precursor, BamA. (889 aa)    
Predicted Functional Partners:
bamD
Outer membrane assembly lipoprotein precursor BamD.
 
 
 0.968
skp
Outer membrane chaperone precursor Skp (OmpH).
 
  
 0.898
FP2094
Protein of unknown function precursor, putative outer membrane protein.
 
 
   0.870
FP2098
Outer membrane protein precursor OmpH family P18.
 
  
 0.854
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.842
lpxC/fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.766
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.753
FP0081
Probable M50 family membrane-associated zinc metalloprotease.
 
  
 0.742
FP0297
Probable transmembrane protein of unknown function.
  
     0.717
FP0239
Probable ABC-type transport system, permease component.
 
   
 0.700
Your Current Organism:
Flavobacterium psychrophilum
NCBI taxonomy Id: 402612
Other names: F. psychrophilum JIP02/86, Flavobacterium psychrophilum JIP02/86, Flavobacterium psychrophilum str. JIP02/86, Flavobacterium psychrophilum strain JIP02/86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.