STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fjo27Probable transmembrane protein of unknown function Fjo27. (101 aa)    
Predicted Functional Partners:
FP1097
Probable transmembrane protein of unknown function.
  
     0.675
FP2117
Protein of unknown function.
 
     0.625
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.618
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
       0.583
FP2076
Probable transmembrane protein of unknown function; putative anti ECF-type sigma factor.
  
     0.564
FP2581
Probable transmembrane protein of unknown function.
  
     0.544
FP1605
Hypothetical protein.
  
     0.524
FP1739
Protein of unknown function.
  
     0.512
FP1197
Protein of unknown function precursor.
  
     0.507
FP1835
Protein of unknown function.
  
     0.497
Your Current Organism:
Flavobacterium psychrophilum
NCBI taxonomy Id: 402612
Other names: F. psychrophilum JIP02/86, Flavobacterium psychrophilum JIP02/86, Flavobacterium psychrophilum str. JIP02/86, Flavobacterium psychrophilum strain JIP02/86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.