Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rpic_0010PFAM: Fimbrial protein; KEGG: pae:PA5284 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Rpic_0762
PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pfo:Pfl_3043 pili assembly chaperone.
  
 
 0.840
Rpic_3810
PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pfo:Pfl_3043 pili assembly chaperone.
  
 
 0.840
Rpic_0014
PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RSc1779 probable activation/secretion signal peptide protein.
   
  
 0.735
Rpic_0763
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl_3044 fimbrial biogenesis outer membrane usher protein.
  
 
 0.707
Rpic_3811
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl_3044 fimbrial biogenesis outer membrane usher protein.
  
 
 0.707
Rpic_4292
KEGG: rso:RS02371 probable signal peptide protein.
   
    0.450
Rpic_1528
PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_6299 conjugation TrbI-like protein.
   
    0.430
Rpic_2653
PFAM: conjugation TrbI family protein; KEGG: dac:Daci_2690 conjugation TrbI family protein.
   
    0.430
Rpic_1527
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rme:Rmet_6300 conjugal transfer protein TrbG/VirB9/CagX.
   
    0.418
Rpic_2652
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: dac:Daci_2691 P-type conjugative transfer protein TrbG.
   
    0.418
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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