Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rpic_1027PFAM: protein of unknown function DUF980; KEGG: rso:RSc1184 hypothetical protein; Belongs to the MtfA family. (288 aa)    
Predicted Functional Partners:
Rpic_1026
KEGG: rso:RSc1183 putative signal peptide protein.
       0.773
Rpic_1028
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc1185 probable transcription regulator protein.
       0.590
Rpic_2835
PFAM: SNARE associated Golgi protein; KEGG: rso:RSc2559 probable DedA DSG-1 protein transmembrane.
  
  
 0.546
Rpic_2232
PFAM: RDD domain containing protein; KEGG: rso:RSc2081 probable transmembrane protein.
  
     0.493
rpmE2
PFAM: ribosomal protein L31; KEGG: reh:H16_A2397 LSU ribosomal protein L31.
       0.451
Rpic_2667
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc2400 probable outer membrane receptor protein.
  
     0.420
Rpic_2903
PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc2667 glycolate oxidase FAD binding subunit.
  
     0.419
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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