STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpic_1193PFAM: polysaccharide deacetylase; KEGG: rso:RSc1318 hypothetical protein. (297 aa)    
Predicted Functional Partners:
Rpic_1196
PFAM: glycosyl transferase family 2; KEGG: rso:RSc1321 putative polymixin resistance glycosyltransferase transmembrane protein.
 
 
 0.992
Rpic_1198
PFAM: small multidrug resistance protein; KEGG: rso:RSc1323 putative small multidrug resistance transmembrane protein.
 
  
 0.962
Rpic_1199
PFAM: glycosyl transferase family 39; KEGG: rso:RSc1324 probable transmembrane protein.
 
  
 0.959
Rpic_1195
PFAM: formyl transferase domain protein; KEGG: rso:RSc1320 hypothetical protein.
 
  
 0.934
Rpic_1749
PFAM: glycosyl transferase family 39; KEGG: rme:Rmet_5966 glycosyl transferase, family 39.
 
  
 0.932
Rpic_1194
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rso:RSc1319 hypothetical protein.
 
  
 0.931
Rpic_1197
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc1322 putative aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.865
Rpic_1192
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc1317 probable bacterioferritin comigratory oxidoreductase protein.
       0.577
Rpic_0600
PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_0656 glycosyl transferase, family 2.
 
  
 0.533
Rpic_1751
PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_5968 glycosyl transferase, family 2.
 
  
 0.526
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.