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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpic_1663PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_2373 ABC-type transport system, permease component. (535 aa)    
Predicted Functional Partners:
Rpic_1662
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2507 ABC transporter related.
 
 
 0.966
Rpic_1661
KEGG: vpa:VPA0557 hypothetical protein.
 
 
 
 0.960
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.851
Rpic_4424
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1223 ABC transporter related.
 
 
 0.802
Rpic_1692
KEGG: vpa:VPA0561 hypothetical protein.
 
    0.757
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.727
Rpic_4369
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_II0062 ABC transporter, ATP-binding protein.
  
 
 0.690
Rpic_1660
KEGG: smd:Smed_0214 hypothetical protein.
       0.642
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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