Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rpic_1995TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: rso:RSc1558 probable TRP repressor binding protein; Belongs to the WrbA family. (197 aa)    
Predicted Functional Partners:
Rpic_2405
KEGG: rso:RSc2207 putative TRP repressor binding protein homolog.
  
  
 
0.924
Rpic_3903
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: spe:Spro_2460 ribosyldihydronicotinamide dehydrogenase (quinone).
    
 0.914
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
Rpic_1996
KEGG: rso:RSc1557 probable transmembrane protein.
       0.794
Rpic_1997
PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc1556 probable oxidoreductase protein.
     
 0.793
Rpic_2923
PFAM: Ferritin Dps family protein; KEGG: rso:RSc2687 putative DNA protection during starvation or oxydative stress transcription regulator protein; Belongs to the Dps family.
  
  
 0.691
Rpic_2267
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: rso:RSc2148 hypothetical protein.
   
  
 0.613
Rpic_1994
PFAM: ribonuclease BN; KEGG: rso:RSc1559 putative ribonuclease BN transmembrane protein.
       0.583
Rpic_2050
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: reh:H16_B0700 serine protein kinase.
   
    0.545
Rpic_3709
KEGG: reh:H16_B0584 conserved hypothetical periplasmic protein.
   
    0.540
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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