Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Rpic_2000PFAM: OmpA/MotB domain protein; KEGG: bpd:BURPS668_A0328 OmpA domain protein. (167 aa)    
Predicted Functional Partners:
Rpic_4045
KEGG: rso:RSp1411 flagellar motor protein MotA.
  
 
 0.986
Rpic_4790
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rso:RSp0343 probable flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
  
 0.927
Rpic_4573
PFAM: response regulator receiver; CheW domain protein; KEGG: rso:RS03881 putative response regulator transcription regulator protein.
  
  
 0.901
Rpic_4782
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rso:RSp0351 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.
 
  
 0.891
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
 
  
 0.880
Rpic_4750
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.855
Rpic_4755
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rso:RSp0377 probable flagellar motor switch protein FliN.
 
  
 0.852
Rpic_4748
PFAM: flagellar protein FliS; KEGG: rso:RSp0384 probable flagellar protein FliS.
 
  
 0.848
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.847
Rpic_4730
PFAM: flagellar motor switch protein FliG; KEGG: rso:RSp0391 flagellar motor switch protein G.
 
  
 0.846
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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