Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rpic_2017KEGG: rso:RSc1538 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Rpic_0624
PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0680 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein.
 
  
 0.925
Rpic_1295
PFAM: alpha/beta hydrolase fold; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmu:Bmul_3649 short-chain dehydrogenase/reductase SDR.
  
     0.597
Rpic_2016
TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: rso:RSc1539 probable hydrolase protein.
       0.593
Rpic_2234
PFAM: metallophosphoesterase; KEGG: rso:RSc2083 hypothetical protein.
 
    0.584
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.510
Rpic_1296
KEGG: bte:BTH_II1809 FF domain protein.
  
     0.471
Rpic_1033
KEGG: rso:RSc1189 hypothetical protein.
 
     0.433
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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