STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpic_2279PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rso:RSc2158 hypothetical protein. (304 aa)    
Predicted Functional Partners:
Rpic_2278
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rso:RSc2157 probable protein kinase.
 
 
 0.939
Rpic_1944
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc1603 probable dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein.
  
 0.872
Rpic_3389
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: rso:RSc3104 putative calcium binding signal peptide protein.
    
 0.743
Rpic_4646
Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.729
Rpic_0927
KEGG: rso:RSc1062 probable transmembrane protein.
 
     0.723
Rpic_0255
KEGG: rso:RSc0400 hypothetical protein.
  
     0.703
Rpic_1087
KEGG: rso:RSc1259 hypothetical signal peptide protein.
  
     0.693
Rpic_1195
PFAM: formyl transferase domain protein; KEGG: rso:RSc1320 hypothetical protein.
  
   0.686
Rpic_2140
KEGG: rso:RSc1986 probable transmembrane protein.
  
     0.686
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.686
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.